IL_8IFE_096

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_096 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2015

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8IFE|1|1A|C|2589
8IFE|1|1A|G|2590
8IFE|1|1A|A|2591
8IFE|1|1A|U|2592
8IFE|1|1A|C|2593
*
8IFE|1|1A|G|2752
8IFE|1|1A|G|2753
8IFE|1|1A|G|2754
8IFE|1|1A|A|2755
8IFE|1|1A|G|2756

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34