IL_8IFE_111
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8IFE|1|1A|A|3663, 8IFE|1|1A|U|3679, 8IFE|1|1A|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFE_111 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0744
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IFE|1|1A|C|3660
8IFE|1|1A|G|3661
8IFE|1|1A|A|3662
8IFE|1|1A|A|3663
8IFE|1|1A|G|3664
8IFE|1|1A|G|3665
*
8IFE|1|1A|U|3677
8IFE|1|1A|G|3678
8IFE|1|1A|U|3679
8IFE|1|1A|U|3680
8IFE|1|1A|G|3681
8IFE|1|1A|A|3682
8IFE|1|1A|C|3683
8IFE|1|1A|G|3684
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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