IL_8IFE_144

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8IFE|1|1A|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_144 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1761

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8IFE|1|1A|C|4582
8IFE|1|1A|C|4583
8IFE|1|1A|A|4584
8IFE|1|1A|U|4585
*
8IFE|1|1A|A|4717
8IFE|1|1A|G|4718
8IFE|1|1A|G|4719
8IFE|1|1A|C|4720
8IFE|1|1A|G|4721

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2I

60S ribosomal protein L13a