IL_8IFE_201

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8IFE|1|2m|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_201 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1843

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|G|611
8IFE|1|2m|U|612
8IFE|1|2m|G|613
8IFE|1|2m|C|614
8IFE|1|2m|C|615
8IFE|1|2m|A|616
8IFE|1|2m|G|617
*
8IFE|1|2m|C|624
8IFE|1|2m|G|625
8IFE|1|2m|G|626
8IFE|1|2m|U|627
8IFE|1|2m|A|628
8IFE|1|2m|A|629
8IFE|1|2m|U|630
8IFE|1|2m|U|631
8IFE|1|2m|C|632

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2p

40S ribosomal protein S3

Chain 3B

40S ribosomal protein S23

Chain 3Q

40S ribosomal protein S30