IL_8IFE_224

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_224 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0733

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|G|1168
8IFE|1|2m|G|1169
8IFE|1|2m|A|1170
8IFE|1|2m|G|1171
8IFE|1|2m|U|1172
8IFE|1|2m|A|1173
8IFE|1|2m|U|1174
8IFE|1|2m|G|1175
*
8IFE|1|2m|U|1186
8IFE|1|2m|G|1187
8IFE|1|2m|A|1188
8IFE|1|2m|A|1189
8IFE|1|2m|A|1190
8IFE|1|2m|C|1191

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 3B

40S ribosomal protein S23