3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
C(UR3)CAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INE_145 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.1765
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8INE|1|2|C|4596
8INE|1|2|UR3|4597
8INE|1|2|C|4598
8INE|1|2|A|4599
8INE|1|2|G|4600
8INE|1|2|U|4601
8INE|1|2|A|4602
8INE|1|2|C|4603
*
8INE|1|2|G|4608
8INE|1|2|G|4609
8INE|1|2|A|4610
8INE|1|2|A|4611
8INE|1|2|C|4612
8INE|1|2|C|4613
8INE|1|2|G|4614

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 6
Eukaryotic translation initiation factor 6
Chain A
G Protein Nucleolar 2
Chain B
60S ribosomal protein L3
Chain I
60S ribosomal protein L9
Chain e
60S ribosomal protein L23
Chain s
Ribosome biogenesis protein NSA2 homolog
Chain z
Protein LLP homolog

Coloring options:


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