IL_8INF_037

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8INF|1|2|G|748, 8INF|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2065

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8INF|1|2|G|745
8INF|1|2|A|746
8INF|1|2|A|747
8INF|1|2|G|748
8INF|1|2|G|749
8INF|1|2|U|750
8INF|1|2|G|751
8INF|1|2|G|752
*
8INF|1|2|U|911
8INF|1|2|G|912
8INF|1|2|U|913
8INF|1|2|U|914
8INF|1|2|A|915
8INF|1|2|C|916
8INF|1|2|A|917
8INF|1|2|G|918
8INF|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a