IL_8INF_106

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGAAUG*CGAGAGA

Length

14 nucleotides

Bulged bases

8INF|1|2|U|2661, 8INF|1|2|A|2674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_106 not in the Motif Atlas

Homologous match to IL_5TBW_073

Geometric discrepancy: 0.1175

The information below is about IL_5TBW_073

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_60192.2

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8INF|1|2|U|2656
8INF|1|2|G|2657
8INF|1|2|G|2658
8INF|1|2|A|2659
8INF|1|2|A|2660
8INF|1|2|U|2661
8INF|1|2|G|2662
*
8INF|1|2|C|2672
8INF|1|2|G|2673
8INF|1|2|A|2674
8INF|1|2|G|2675
8INF|1|2|A|2676
8INF|1|2|G|2677
8INF|1|2|A|2678

Current chains

Chain 2

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L30

Chain F

60S ribosomal protein L34

Chain X

60S ribosomal protein L37a

Chain a

60S ribosomal protein L19

Chain i

60S ribosomal protein L27

Chain w

Ribosome biogenesis protein NOP53