IL_8INF_107

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_107 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1245

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8INF|1|2|A|2832
8INF|1|2|A|2833
8INF|1|2|C|2834
8INF|1|2|A|2835
8INF|1|2|A|2836
8INF|1|2|U|2837
8INF|1|2|G|2838
*
8INF|1|2|C|3850
8INF|1|2|U|3851
8INF|1|2|A|3852
8INF|1|2|U|3853

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain B

60S ribosomal protein L3

Chain j

60S ribosomal protein L31