IL_8INF_129

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCU*G(B8W)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_129 not in the Motif Atlas

Geometric match to IL_8AF0_004

Geometric discrepancy: 0.1771

The information below is about IL_8AF0_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8INF|1|2|U|3925
8INF|1|2|C|3926
8INF|1|2|U|3927
*
8INF|1|2|G|4184
8INF|1|2|B8W|4185
8INF|1|2|A|4186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a

Chain f

Protein SDA1 homolog

Chain m

60S ribosomal protein L8