3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGG*CAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_164 not in the Motif Atlas
Geometric match to IL_3D0U_006
Geometric discrepancy: 0.1343
The information below is about IL_3D0U_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8INF|1|2|G|4992
8INF|1|2|G|4993
8INF|1|2|G|4994
*
8INF|1|2|C|5057
8INF|1|2|A|5058
8INF|1|2|C|5059

Current chains

Chain 2
28S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain j
60S ribosomal protein L31

Coloring options:


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