3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUU*GUCAGC
Length
9 nucleotides
Bulged bases
8INF|1|2|G|5049
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_166 not in the Motif Atlas
Homologous match to IL_8C3A_138
Geometric discrepancy: 0.1747
The information below is about IL_8C3A_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_84428.1
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8INF|1|2|G|5000
8INF|1|2|U|5001
8INF|1|2|U|5002
*
8INF|1|2|G|5045
8INF|1|2|U|5046
8INF|1|2|C|5047
8INF|1|2|A|5048
8INF|1|2|G|5049
8INF|1|2|C|5050

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 7
Probable ribosome biogenesis protein RLP24
Chain B
60S ribosomal protein L3
Chain j
60S ribosomal protein L31

Coloring options:


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