IL_8INK_179

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_179 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1326

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8INK|1|2|G|2358
8INK|1|2|U|2359
8INK|1|2|A|2360
8INK|1|2|G|2361
8INK|1|2|U|2362
8INK|1|2|A2M|2363
8INK|1|2|OMG|2364
*
8INK|1|2|C|3858
8INK|1|2|G|3859
8INK|1|2|A|3860
8INK|1|2|A|3861
8INK|1|2|A|3862
8INK|1|2|C|3863

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain D

60S ribosomal protein L4

Chain Y

60S ribosomal protein L17