IL_8IP8_011

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGA,UCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_011 not in the Motif Atlas

Geometric match to IL_8C3A_393

Geometric discrepancy: 0.1949

The information below is about IL_8C3A_393

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8IP8|1|RB|C|170
8IP8|1|RB|G|171
8IP8|1|RB|A|172
*
8IP8|1|RB|U|242
8IP8|1|RB|C|243
8IP8|1|RB|G|244

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein uL29

Chain KB

60S ribosomal protein eL13