IL_8IP8_017
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAU*ACGGAUA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_017 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.0813
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|U|402
8IP8|1|RB|U|403
8IP8|1|RB|G|404
8IP8|1|RB|A|405
8IP8|1|RB|A|406
8IP8|1|RB|A|407
8IP8|1|RB|U|408
*
8IP8|1|SB|A|13
8IP8|1|SB|C|14
8IP8|1|SB|G|15
8IP8|1|SB|G|16
8IP8|1|SB|A|17
8IP8|1|SB|U|18
8IP8|1|SB|A|19
Current chains
- Chain RB
- 60S ribosomal RNA
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain MA
- 60S ribosomal protein uL22
- Chain TA
- 60S ribosomal protein eL32
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