IL_8IP8_019

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGC*GG

Length

6 nucleotides

Bulged bases

8IP8|1|RB|G|436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_019 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1891

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8IP8|1|RB|C|434
8IP8|1|RB|G|435
8IP8|1|RB|G|436
8IP8|1|RB|C|437
*
8IP8|1|RB|G|625
8IP8|1|RB|G|626

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein eL33

Chain QA

60S ribosomal protein eL28

Chain TA

60S ribosomal protein eL32