IL_8IP8_038

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_038 not in the Motif Atlas

Homologous match to IL_8P9A_262

Geometric discrepancy: 0.0651

The information below is about IL_8P9A_262

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8IP8|1|RB|U|957
8IP8|1|RB|U|958
8IP8|1|RB|U|959
*
8IP8|1|RB|A|968
8IP8|1|RB|U|969
8IP8|1|RB|A|970

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein eL21

Chain IA

60S ribosomal protein uL15

Chain JA

60S ribosomal protein eL18

Chain KB

60S ribosomal protein eL13

Chain OB

60S ribosomal protein eL29