IL_8IP8_045
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8IP8|1|RB|C|1005
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_045 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.2917
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|RB|G|1003
8IP8|1|RB|C|1004
8IP8|1|RB|C|1005
8IP8|1|RB|A|1006
8IP8|1|RB|A|1007
8IP8|1|RB|U|1008
*
8IP8|1|RB|A|1050
8IP8|1|RB|A|1051
8IP8|1|RB|A|1052
8IP8|1|RB|C|1053
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain HB
- 60S ribosomal protein uL16
- Chain KA
- 60S ribosomal protein uL18
- Chain TB
- 5S ribosomal RNA; 5S rRNA
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