IL_8IP8_056
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAACCUAG*CUGAAG
- Length
- 15 nucleotides
- Bulged bases
- 8IP8|1|RB|C|1194, 8IP8|1|RB|C|1195, 8IP8|1|RB|U|1196, 8IP8|1|RB|G|1320, 8IP8|1|RB|A|1322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_056 not in the Motif Atlas
- Homologous match to IL_8P9A_279
- Geometric discrepancy: 0.121
- The information below is about IL_8P9A_279
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|RB|C|1190
8IP8|1|RB|U|1191
8IP8|1|RB|A|1192
8IP8|1|RB|A|1193
8IP8|1|RB|C|1194
8IP8|1|RB|C|1195
8IP8|1|RB|U|1196
8IP8|1|RB|A|1197
8IP8|1|RB|G|1198
*
8IP8|1|RB|C|1318
8IP8|1|RB|U|1319
8IP8|1|RB|G|1320
8IP8|1|RB|A|1321
8IP8|1|RB|A|1322
8IP8|1|RB|G|1323
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain FA
- 60S ribosomal protein uL6
- Chain FB
- 60S ribosomal protein uL13
- Chain JB
- 60S ribosomal protein eL40
- Chain XA
- 60S ribosomal protein eL14
- Chain YA
- 60S ribosomal protein eL20
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