IL_8IP8_057
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAACCCACAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1200, 8IP8|1|RB|A|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_057 not in the Motif Atlas
- Homologous match to IL_8C3A_055
- Geometric discrepancy: 0.1909
- The information below is about IL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|RB|G|1198
8IP8|1|RB|A|1199
8IP8|1|RB|A|1200
8IP8|1|RB|C|1201
8IP8|1|RB|C|1202
8IP8|1|RB|C|1203
8IP8|1|RB|A|1204
8IP8|1|RB|C|1205
8IP8|1|RB|A|1206
8IP8|1|RB|A|1207
8IP8|1|RB|A|1208
8IP8|1|RB|G|1209
*
8IP8|1|RB|C|1303
8IP8|1|RB|G|1304
8IP8|1|RB|A|1305
8IP8|1|RB|A|1306
8IP8|1|RB|A|1307
8IP8|1|RB|A|1308
8IP8|1|RB|U|1309
8IP8|1|RB|G|1310
8IP8|1|RB|G|1311
8IP8|1|RB|A|1312
8IP8|1|RB|U|1313
8IP8|1|RB|G|1314
8IP8|1|RB|G|1315
8IP8|1|RB|C|1316
8IP8|1|RB|G|1317
8IP8|1|RB|C|1318
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein uL30
- Chain DB
- 60S ribosomal protein uL3
- Chain FB
- 60S ribosomal protein uL13
- Chain HB
- 60S ribosomal protein uL16
- Chain JB
- 60S ribosomal protein eL40
- Chain MB
- 60S ribosomal protein eL33
- Chain TB
- 5S ribosomal RNA; 5S rRNA
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