IL_8IP8_058

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8IP8|1|RB|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_058 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.0905

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8IP8|1|RB|G|1211
8IP8|1|RB|U|1212
8IP8|1|RB|G|1213
*
8IP8|1|RB|C|1300
8IP8|1|RB|C|1301

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain FA

60S ribosomal protein uL6

Chain HB

60S ribosomal protein uL16

Chain JB

60S ribosomal protein eL40

Chain TB

5S ribosomal RNA; 5S rRNA

Chain YA

60S ribosomal protein eL20