IL_8IP8_067
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_067 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.0659
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8IP8|1|RB|G|1447
8IP8|1|RB|U|1448
8IP8|1|RB|A|1449
8IP8|1|RB|G|1450
8IP8|1|RB|U|1451
8IP8|1|RB|A|1452
8IP8|1|RB|G|1453
*
8IP8|1|RB|C|2347
8IP8|1|RB|G|2348
8IP8|1|RB|A|2349
8IP8|1|RB|A|2350
8IP8|1|RB|A|2351
8IP8|1|RB|C|2352
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain MA
- 60S ribosomal protein uL22
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
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