IL_8IP8_068

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GCA

Length

8 nucleotides

Bulged bases

8IP8|1|RB|C|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_068 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.3752

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8IP8|1|RB|U|1504
8IP8|1|RB|G|1505
8IP8|1|RB|A|1506
8IP8|1|RB|A|1507
8IP8|1|RB|C|1508
*
8IP8|1|RB|G|1516
8IP8|1|RB|C|1517
8IP8|1|RB|A|1518

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain MA

60S ribosomal protein uL22

Chain VA

60S ribosomal protein eL39