IL_8IP8_070

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_070 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.1365

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8IP8|1|RB|G|1544
8IP8|1|RB|G|1545
*
8IP8|1|RB|C|1554
8IP8|1|RB|G|1555
8IP8|1|RB|G|1556
8IP8|1|RB|C|1557

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DA

60S ribosomal protein uL2

Chain HA

60S ribosomal protein eL15

Chain SB

5.8S ribosomal RNA; 5.8S rRNA