IL_8IP8_071

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_071 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.175

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8IP8|1|RB|G|1616
8IP8|1|RB|A|1617
8IP8|1|RB|U|1618
8IP8|1|RB|G|1619
*
8IP8|1|RB|C|1820
8IP8|1|RB|G|1821
8IP8|1|RB|C|1822

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain NB

60S ribosomal protein eL38

Chain SB

5.8S ribosomal RNA; 5.8S rRNA