IL_8IP8_084

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_084 not in the Motif Atlas

Homologous match to IL_8P9A_303

Geometric discrepancy: 0.0888

The information below is about IL_8P9A_303

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

8IP8|1|RB|A|1891
8IP8|1|RB|A|1892
8IP8|1|RB|G|1893
*
8IP8|1|RB|C|2331
8IP8|1|RB|C|2332
8IP8|1|RB|U|2333

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain GA

60S ribosomal protein uL14

Chain OA

60S ribosomal protein eL24