IL_8IP8_086

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8IP8|1|RB|G|2328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_086 not in the Motif Atlas

Geometric match to IL_8C3A_083

Geometric discrepancy: 0.0703

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8IP8|1|RB|A|1897
8IP8|1|RB|G|1898
8IP8|1|RB|U|1899
8IP8|1|RB|C|1900
8IP8|1|RB|G|1901
8IP8|1|RB|G|1902
*
8IP8|1|RB|C|2326
8IP8|1|RB|U|2327
8IP8|1|RB|G|2328
8IP8|1|RB|U|2329

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain GA

60S ribosomal protein uL14