IL_8IP8_087
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1927
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_087 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1102
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IP8|1|RB|C|1914
8IP8|1|RB|G|1915
8IP8|1|RB|U|1916
8IP8|1|RB|A|1917
8IP8|1|RB|A|1918
8IP8|1|RB|C|1919
*
8IP8|1|RB|G|1924
8IP8|1|RB|G|1925
8IP8|1|RB|A|1926
8IP8|1|RB|A|1927
8IP8|1|RB|A|1928
8IP8|1|RB|A|1929
8IP8|1|RB|G|1930
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain GB
- 60S ribosomal protein eL43
- Chain IB
- 60S ribosomal protein eL41
- Chain LA
- 60S ribosomal protein eL19
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
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