IL_8IP8_096
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_096 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.1657
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|RB|U|2204
8IP8|1|RB|C|2205
8IP8|1|RB|A|2206
8IP8|1|RB|A|2207
8IP8|1|RB|A|2208
8IP8|1|RB|G|2209
8IP8|1|RB|U|2210
*
8IP8|1|RB|A|2221
8IP8|1|RB|A|2222
8IP8|1|RB|C|2223
8IP8|1|RB|C|2224
8IP8|1|RB|A|2225
8IP8|1|RB|A|2226
8IP8|1|RB|G|2227
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein eL36
- Chain DA
- 60S ribosomal protein uL2
- Chain dl
- CCA end of E-tRNA
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