IL_8IP8_098

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8IP8|1|RB|A|2274, 8IP8|1|RB|C|2280, 8IP8|1|RB|C|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_098 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.091

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8IP8|1|RB|C|2270
8IP8|1|RB|C|2271
8IP8|1|RB|A|2272
8IP8|1|RB|A|2273
8IP8|1|RB|A|2274
8IP8|1|RB|U|2275
8IP8|1|RB|G|2276
8IP8|1|RB|C|2277
8IP8|1|RB|C|2278
8IP8|1|RB|U|2279
8IP8|1|RB|C|2280
8IP8|1|RB|G|2281
*
8IP8|1|RB|C|2297
8IP8|1|RB|G|2298
8IP8|1|RB|C|2299
8IP8|1|RB|G|2300

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain aa

Small subunit ribosomal RNA; SSU rRNA

Chain bl

eukaryotic release factor 1