IL_8IP8_118

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8IP8|1|RB|U|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_118 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1536

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8IP8|1|RB|G|2825
8IP8|1|RB|U|2826
8IP8|1|RB|G|2827
*
8IP8|1|RB|U|2855
8IP8|1|RB|U|2856
8IP8|1|RB|U|2857
8IP8|1|RB|U|2858
8IP8|1|RB|U|2859

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain HB

60S ribosomal protein uL16

Chain bl

eukaryotic release factor 1