IL_8IP8_121

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8IP8|1|RB|G|2942, 8IP8|1|RB|A|2943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_121 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0438

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8IP8|1|RB|C|2876
8IP8|1|RB|U|2877
8IP8|1|RB|C|2878
*
8IP8|1|RB|G|2940
8IP8|1|RB|U|2941
8IP8|1|RB|G|2942
8IP8|1|RB|A|2943
8IP8|1|RB|G|2944

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain GA

60S ribosomal protein uL14