IL_8IP8_123

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8IP8|1|RB|A|2908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_123 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3832

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8IP8|1|RB|U|2888
8IP8|1|RB|U|2889
8IP8|1|RB|G|2890
*
8IP8|1|RB|C|2905
8IP8|1|RB|C|2906
8IP8|1|RB|A|2907
8IP8|1|RB|A|2908
8IP8|1|RB|G|2909

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain JB

60S ribosomal protein eL40