IL_8IP8_130

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUU*ACCG

Length

9 nucleotides

Bulged bases

8IP8|1|RB|C|3088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_130 not in the Motif Atlas

Homologous match to IL_8P9A_345

Geometric discrepancy: 0.0867

The information below is about IL_8P9A_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8IP8|1|RB|C|3043
8IP8|1|RB|A|3044
8IP8|1|RB|A|3045
8IP8|1|RB|U|3046
8IP8|1|RB|U|3047
*
8IP8|1|RB|A|3087
8IP8|1|RB|C|3088
8IP8|1|RB|C|3089
8IP8|1|RB|G|3090

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain GA

60S ribosomal protein uL14

Chain OA

60S ribosomal protein eL24