IL_8IP8_145

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_145 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.2085

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8IP8|1|RB|A|3329
8IP8|1|RB|G|3330
8IP8|1|RB|A|3331
8IP8|1|RB|G|3332
*
8IP8|1|RB|C|3347
8IP8|1|RB|G|3348
8IP8|1|RB|A|3349
8IP8|1|RB|U|3350

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain ZA

60S ribosomal protein eL22

Chain ca

40S ribosomal protein eS8