IL_8IP8_170

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_170 not in the Motif Atlas

Homologous match to IL_8P9A_385

Geometric discrepancy: 0.2505

The information below is about IL_8P9A_385

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8IP8|1|aa|C|184
8IP8|1|aa|G|185
8IP8|1|aa|A|186
8IP8|1|aa|C|187
*
8IP8|1|aa|G|194
8IP8|1|aa|A|195
8IP8|1|aa|G|196
8IP8|1|aa|G|197

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8