IL_8IP8_173

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_173 not in the Motif Atlas

Homologous match to IL_8C3A_406

Geometric discrepancy: 0.094

The information below is about IL_8C3A_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8IP8|1|aa|A|203
8IP8|1|aa|U|204
8IP8|1|aa|U|205
*
8IP8|1|aa|A|260
8IP8|1|aa|C|261
8IP8|1|aa|U|262

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ja

40S ribosomal protein eS4