IL_8IP8_190
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_190 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.0737
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8IP8|1|aa|A|554
8IP8|1|aa|G|555
8IP8|1|aa|G|556
8IP8|1|aa|G|557
8IP8|1|aa|C|558
8IP8|1|aa|A|559
8IP8|1|aa|A|560
8IP8|1|aa|G|561
*
8IP8|1|aa|C|591
8IP8|1|aa|U|592
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain eb
- 40S ribosomal protein uS4
- Chain fb
- 40S ribosomal protein uS5
- Chain ya
- 40S ribosomal protein eS30
Coloring options: