IL_8IP8_192
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8IP8|1|aa|A|583
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_192 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1489
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|aa|G|566
8IP8|1|aa|U|567
8IP8|1|aa|G|568
8IP8|1|aa|C|569
8IP8|1|aa|C|570
8IP8|1|aa|A|571
8IP8|1|aa|G|572
*
8IP8|1|aa|C|579
8IP8|1|aa|G|580
8IP8|1|aa|G|581
8IP8|1|aa|U|582
8IP8|1|aa|A|583
8IP8|1|aa|A|584
8IP8|1|aa|U|585
8IP8|1|aa|U|586
8IP8|1|aa|C|587
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain al
- mRNA
- Chain bl
- eukaryotic release factor 1
- Chain ga
- 40S ribosomal protein uS12
- Chain ia
- 40S ribosomal protein uS3
- Chain ya
- 40S ribosomal protein eS30
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