IL_8IP8_198

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_198 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.1641

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8IP8|1|aa|A|752
8IP8|1|aa|C|753
*
8IP8|1|aa|G|808
8IP8|1|aa|G|809
8IP8|1|aa|A|810
8IP8|1|aa|U|811

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ga

40S ribosomal protein uS12

Chain hb

40S ribosomal protein eS7

Chain ib

40S ribosomal protein uS17

Chain va

40S ribosomal protein uS8