IL_8IP8_208
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_208 not in the Motif Atlas
- Homologous match to IL_8C3A_439
- Geometric discrepancy: 0.079
- The information below is about IL_8C3A_439
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8IP8|1|aa|G|890
8IP8|1|aa|U|891
8IP8|1|aa|A|892
8IP8|1|aa|U|893
*
8IP8|1|aa|A|929
8IP8|1|aa|G|930
8IP8|1|aa|A|931
8IP8|1|aa|C|932
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain bb
- 40S ribosomal protein eS1
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
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