IL_8IP8_209
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUCAG*CUUGGAUUU
- Length
- 15 nucleotides
- Bulged bases
- 8IP8|1|aa|G|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_209 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.2246
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8IP8|1|aa|A|899
8IP8|1|aa|G|900
8IP8|1|aa|U|901
8IP8|1|aa|C|902
8IP8|1|aa|A|903
8IP8|1|aa|G|904
*
8IP8|1|aa|C|915
8IP8|1|aa|U|916
8IP8|1|aa|U|917
8IP8|1|aa|G|918
8IP8|1|aa|G|919
8IP8|1|aa|A|920
8IP8|1|aa|U|921
8IP8|1|aa|U|922
8IP8|1|aa|U|923
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain bb
- 40S ribosomal protein eS1
- Chain na
- 40S ribosomal protein uS11
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