IL_8IP8_213
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_213 not in the Motif Atlas
- Homologous match to IL_8P9A_426
- Geometric discrepancy: 0.0907
- The information below is about IL_8P9A_426
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8IP8|1|aa|G|1046
8IP8|1|aa|G|1047
8IP8|1|aa|A|1048
8IP8|1|aa|U|1049
*
8IP8|1|aa|G|1079
8IP8|1|aa|C|1080
8IP8|1|aa|A|1081
8IP8|1|aa|C|1082
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain bb
- 40S ribosomal protein eS1
- Chain db
- 40S ribosomal protein eS26
- Chain pa
- 40S ribosomal protein uS15
- Chain za
- 40S ribosomal protein uS2
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