IL_8IP8_234

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8IP8|1|aa|C|1350, 8IP8|1|aa|U|1351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_234 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.3196

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

8IP8|1|aa|A|1349
8IP8|1|aa|C|1350
8IP8|1|aa|U|1351
8IP8|1|aa|A|1352
*
8IP8|1|aa|U|1383
8IP8|1|aa|U|1384
8IP8|1|aa|C|1385
8IP8|1|aa|U|1386

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ia

40S ribosomal protein uS3

Chain la

40S ribosomal protein uS9

Chain ma

40S ribosomal protein uS10