IL_8IP8_237
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUA*UUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_237 not in the Motif Atlas
- Geometric match to IL_4P3T_001
- Geometric discrepancy: 0.0913
- The information below is about IL_4P3T_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8IP8|1|aa|G|1483
8IP8|1|aa|U|1484
8IP8|1|aa|A|1485
*
8IP8|1|aa|U|1536
8IP8|1|aa|U|1537
8IP8|1|aa|C|1538
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ka
- 40S ribosomal protein uS7
- Chain la
- 40S ribosomal protein uS9
- Chain oa
- 40S ribosomal protein uS13
- Chain ra
- 40S ribosomal protein eS19
- Chain ta
- 40S ribosomal protein eS25
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