IL_8IP8_243
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_243 not in the Motif Atlas
- Homologous match to IL_8C3A_472
- Geometric discrepancy: 0.0626
- The information below is about IL_8C3A_472
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8IP8|1|aa|G|1650
8IP8|1|aa|U|1651
8IP8|1|aa|C|1652
*
8IP8|1|aa|G|1767
8IP8|1|aa|U|1768
8IP8|1|aa|C|1769
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain IB
- 60S ribosomal protein eL41
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain al
- mRNA
- Chain bl
- eukaryotic release factor 1
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