IL_8IP8_244
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 8IP8|1|aa|A|1766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_244 not in the Motif Atlas
- Geometric match to IL_5J7L_009
- Geometric discrepancy: 0.1827
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8IP8|1|aa|C|1652
8IP8|1|aa|G|1653
8IP8|1|aa|C|1654
*
8IP8|1|aa|G|1764
8IP8|1|aa|A|1765
8IP8|1|aa|A|1766
8IP8|1|aa|G|1767
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain IB
- 60S ribosomal protein eL41
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain al
- mRNA
- Chain bl
- eukaryotic release factor 1
- Chain ga
- 40S ribosomal protein uS12
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