IL_8IP8_252

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_252 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1669

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8IP8|1|aa|C|1686
8IP8|1|aa|G|1687
8IP8|1|aa|G|1688
8IP8|1|aa|A|1689
8IP8|1|aa|U|1690
*
8IP8|1|aa|A|1729
8IP8|1|aa|G|1730
8IP8|1|aa|A|1731
8IP8|1|aa|A|1732
8IP8|1|aa|G|1733

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain OA

60S ribosomal protein eL24

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6