IL_8IP8_257

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_257 not in the Motif Atlas

Homologous match to IL_8C3A_481

Geometric discrepancy: 0.1172

The information below is about IL_8C3A_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8IP8|1|RB|A|1010
8IP8|1|RB|U|1011
8IP8|1|RB|U|1012
8IP8|1|RB|A|1013
*
8IP8|1|RB|U|1045
8IP8|1|RB|U|1046
8IP8|1|RB|C|1047
8IP8|1|RB|U|1048

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain HB

60S ribosomal protein uL16

Chain KA

60S ribosomal protein uL18

Chain TB

5S ribosomal RNA; 5S rRNA