IL_8IP8_263

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUACA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_263 not in the Motif Atlas

Geometric match to IL_8C3A_394

Geometric discrepancy: 0.3462

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8IP8|1|aa|G|520
8IP8|1|aa|U|521
8IP8|1|aa|A|522
8IP8|1|aa|C|523
8IP8|1|aa|A|524
*
8IP8|1|aa|U|536
8IP8|1|aa|U|537
8IP8|1|aa|A|538
8IP8|1|aa|A|539
8IP8|1|aa|C|540

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain eb

40S ribosomal protein uS4